BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB038A07SP1|AL430472
(813 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig171 183 4e-46
>3x_Contig171
Length = 902
Score = 183 bits (88), Expect = 4e-46
Identities = 108/116 (93%)
Strand = Plus / Plus
Query: 508 cttatatawtattaataaacatttctatattaaataccttttataaaataacaattattc 567
||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 12 cttatattttattaataaacatttcgagattaaatacctttgataaaataacaattattc 71
Query: 568 cccaaataatatttatatctttaccattctttattattttattaaatwataatatt 623
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 72 cccaaataatatttatagctgtaccattctttattattttattaaataataatatt 127
Score = 179 bits (86), Expect = 7e-45
Identities = 151/176 (85%)
Strand = Plus / Plus
Query: 638 ctatactaacatatatttcgtgkaaaaccakctattttctaaccatatttttctttcacc 697
|||||||||||||||||||||| |||||| |||||| | ||||| |||| |||||||||
Sbjct: 142 ctatactaacatatatttcgtggtaaaccagctatttgcgaaccagatttgtctttcacc 201
Query: 698 kcttaacacaactcatcatattatatttcwacatcaaccttttctaccttttccttcttt 757
||||||||||||||||| || ||||| | |||||||||| ||| ||| ||||| |||
Sbjct: 202 gcttaacacaactcatcagatgatattgcaacatcaacctgttcgaccgtttccgtctgg 261
Query: 758 tcatattaatatmttcctctttcttttcaattaatattaactaattatttatatat 813
||||||||| || ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 262 tcatattaagatcgtccgctttcgggtcaattaatattaactaattatttatatat 317
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.44 0.721 1.36
Gapped
Lambda K H
1.44 0.721 1.36
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8319
Number of Sequences: 1807
Number of extensions: 8319
Number of successful extensions: 293
Number of sequences better than 1.0e-20: 1
length of query: 813
length of database: 10,358,551
effective HSP length: 16
effective length of query: 797
effective length of database: 10,329,639
effective search space: 8232722283
effective search space used: 8232722283
T: 0
A: 40
X1: 5 (10.4 bits)
X2: 14 (29.2 bits)
S1: 11 (23.4 bits)
S2: 48 (100.5 bits)